kfTMBmcmc: Sample mcmc from kalman filter model uses tmbstan this...

In carrieholt/KF-funcs: Kalman filter functions

Sample mcmc from kalman filter model uses tmbstan this function does not work well

Description

Sample mcmc from kalman filter model uses tmbstan this function does not work well

Usage

kfTMBmcmc(
  data,
  silent = FALSE,
  control = TMBcontrol(),
  iter = 2000,
  chains = 4,
  init = "random",
  lower = c(-Inf, -Inf, -Inf, -Inf),
  upper = c(Inf, Inf, Inf, Inf),
  controlstan = list(adapt_delta = 0.95, max_treedepth = 15),
  warmup = 500,
  thin = 1
)

Arguments

silent	Silent or optimization details?
control	Behaves like rstan
iter	number of iteration for mcmc sampling
chains	number of mcmc chains
init	Initial values for the sampler. Behaves like tmbstan
lower	Vector of lower parameter bounds. Behaves like tmbstan
upper	Vector of upper parameter bounds. Behaves like tmbstan
warmup	Behaves like rstan
thin	Behaves like rstan
tmb_obj	object from the output of the kfTMB function

carrieholt/KF-funcs documentation built on July 26, 2022, 7:24 a.m.