API for carter-allen/dpeak
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
| Global functions | |
|---|---|
| .bg_SET | Man page Source code |
| .cloglik | Man page |
| .combineModelPET | Source code |
| .combineModelSET | Source code |
| .constructExtRead | Man page Source code |
| .deconCore | Man page |
| .deconCorePET | Source code |
| .deconCoreSET | Source code |
| .deconInit | Man page |
| .deconInitPET | Source code |
| .deconInitSET | Source code |
| .deconWrapper | Man page Source code |
| .dlength | Man page |
| .exportBED | Man page Source code |
| .exportGFF | Man page Source code |
| .exportTXT | Man page Source code |
| .ff_bg_PET | Man page |
| .ff_bg_PET_iter | Man page |
| .ff_bg_SET_iter | Man page |
| .ff_dlength | Source code |
| .ff_ismaxZ0 | Source code |
| .ff_ma | Man page |
| .ff_normalize | Source code |
| .ff_samp | Source code |
| .ff_score | Man page Source code |
| .ff_stack | Source code |
| .generateFragment | Man page Source code |
| .lineStrandData | Source code |
| .loglik | Man page |
| .loglikPET | Source code |
| .loglikSET | Source code |
| .matchPeakRead | Source code |
| .plotBIC | Source code |
| .plotFit | Man page Source code |
| .plotGOF | Man page Source code |
| .plotStrandData | Source code |
| .selectModel | Man page Source code |
| .stackFragment | Man page Source code |
| DpeakData-class | Man page |
| DpeakFit-class | Man page |
| DpeakMotif-class | Man page |
| dpeak | Man page |
| dpeak-package | Man page |
| dpeakFit | Man page |
| dpeakFit,DpeakData-method | Man page |
| dpeakMotif | Man page Source code |
| dpeakRead | Man page Source code |
| exampleData | Man page |
| exportPeakList | Man page |
| exportPeakList,DpeakFit-method | Man page |
| exportPlot | Man page |
| exportPlot,DpeakData,missing-method | Man page |
| exportPlot,DpeakFit,missing-method | Man page |
| printEmpty | Man page |
| printEmpty,DpeakData-method | Man page |
| show,DpeakData-method | Man page |
| show,DpeakFit-method | Man page |
| show,DpeakMotif-method | Man page |
