Man pages for carter-allen/dpeak
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
| DpeakData-class | Class "DpeakData" |
| dpeakFit | Fit dPeak model |
| DpeakFit-class | Class "DpeakFit" |
| dpeak-internal | Internal dpeak objects |
| dpeakMotif | Implement de novo motif analysis based on the peak list |
| DpeakMotif-class | Class "DpeakMotif" |
| dpeak-package | dPeak (Deconvolution of Peaks in ChIP-seq Analysis) |
| dpeakRead | Import peak list and aligned read files |
| exampleData | E. coli ChIP-seq Dataset |
| exportPeakList | Export deconvolution results to text files |
| exportPlot | Export plots to pdf files. |
| printEmpty | Return the peak regions without any reads. |
