API for cas-bioinf/metagenboot
Diagnostics for Metagenomic Data via Model-Based Bootstrapping
| Global functions | |
|---|---|
| aggregate_consistencies | Source code |
| align_single_MDS | Source code |
| alpha_guess_bayes | Source code |
| alpha_guess_ml | Source code |
| apply_per_draw | Source code |
| bootstrap_func_dm | Source code |
| bootstrap_proportions_dm | Source code |
| bootstrap_proportions_dm_single | Source code |
| bootstrap_reads_DESeq2 | Source code |
| bootstrap_reads_dm | Source code |
| bootstrap_reads_dm_single | Source code |
| bootstrap_reads_jackknife_observations | Source code |
| bootstrap_reads_rarefy | Source code |
| check_point_matrix | Source code |
| compute_angles | Source code |
| connectivity_matrix_direct | Source code |
| connectivity_matrix_direct_assymmetric | Source code |
| connectivity_stats_all_groups | Source code |
| connectivity_stats_group | Source code |
| consistency_angles | Source code |
| consistency_angles_per_point | Source code |
| consistency_distances | Source code |
| consistency_distances_per_point | Source code |
| consistency_location | Source code |
| consistency_location_per_point | Source code |
| dirichlet_multinomial_lpmf | Source code |
| dirichlet_multinomial_lpmf_dalpha | Source code |
| distance_scaling | Source code |
| eval_mds_experiment | Source code |
| flatten_posterior_draws | Source code |
| get_angles_per_point | Source code |
| get_bootstrap_draw | Source code |
| get_dirichlet_proportions | Source code |
| get_dm_model | Source code |
| get_n_angles_per_point | Source code |
| get_n_bootstrap_draws | Source code |
| is_observation_subset | Source code |
| is_point_matrix | Source code |
| mds_sensitivity_check | Source code |
| mds_sensitivity_check_compute | Source code |
| mds_sensitivity_check_eval | Source code |
| metaMDS_per_draw | Source code |
| metagenboot_options | Source code |
| pairwise_widest_path_distances_from_matrix | Source code |
| plot_mds | Source code |
| prepare_prior | Source code |
| rdirichlet_multinomial | Source code |
| run_mds_experiment | Source code |
| summarise_bootstrap_per_draw | Source code |
| summarise_bootstrap_per_observation | Source code |
| summarise_bootstrap_richness | Source code |
| synthetic_convex_mixture | Source code |
| transform_mse_to_consistency | Source code |
