clusterAnnotation: Integration of manual cluster annotations
In casanova-lab/iMUBAC: Integration of Multi-Batch Cytometry datasets
View source: R/clusterAnnotation.R
clusterAnnotation R Documentation
Integration of manual cluster annotations
Description
clusterAnnotation takes both an SCE object returned by
clusterPropagation and a data.frame of annotations as inputs.
Usage
clusterAnnotation(sce, df_anno)
Arguments
sce
A SingleCellExperiment object.
colData(sce) must contain the cluster_id column.
df_anno
A data.frame which has the following columns: cluster_id, celltype,
celltype_detailed, and order. The order column will be used to define the order of
the factor levels for cell types.
Value
A SingleCellExperiment-class object.
casanova-lab/iMUBAC documentation built on Sept. 13, 2022, 6:36 p.m.
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View source: R/clusterAnnotation.R
| clusterAnnotation | R Documentation |
Integration of manual cluster annotations
Description
clusterAnnotation takes both an SCE object returned by
clusterPropagation and a data.frame of annotations as inputs.
Usage
clusterAnnotation(sce, df_anno)
Arguments
sce |
A |
df_anno |
A data.frame which has the following columns: cluster_id, celltype, celltype_detailed, and order. The order column will be used to define the order of the factor levels for cell types. |
Value
A SingleCellExperiment-class object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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