cran-comments.md
In caseybreen/gompertztrunc: Conducting Maximum Likelihood Estimation with Truncated Mortality Data
Gompertztrunc 0.1.2
First submission of a patch release. Features of this release include:
-
Reference added to description.
-
Fixed a problem with computation of standard errors in gompertz_mle().
-
Other small bug fixes in gompertz_mle() and package vignette.
Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD check results
❯ On windows-x86_64-devel (r-devel)
checking CRAN incoming feasibility ... [16s] NOTE
Maintainer: 'Maria Osborne mariaosborne@berkeley.edu'
Possibly misspelled words in DESCRIPTION:
Goldstein (15:18)
al (15:31)
et (15:28)
❯ On windows-x86_64-devel (r-devel)
checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
''NULL''
❯ On windows-x86_64-devel (r-devel)
checking for detritus in the temp directory ... NOTE
Found the following files/directories:
'lastMiKTeXException'
❯ On ubuntu-gcc-release (r-release)
checking CRAN incoming feasibility ... [8s/24s] NOTE
Maintainer: ‘Maria Osborne mariaosborne@berkeley.edu’
Possibly misspelled words in DESCRIPTION:
al (15:31)
et (15:28)
Goldstein (15:18)
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
checking examples ... [7s/19s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
convert_hazards_to_ex 2.699 0.12 7.357
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
checking HTML version of manual ... NOTE
Skipping checking HTML validation: no command 'tidy' found
❯ On fedora-clang-devel (r-devel)
checking CRAN incoming feasibility ... [9s/34s] NOTE
Maintainer: ‘Maria Osborne mariaosborne@berkeley.edu’
Possibly misspelled words in DESCRIPTION:
Goldstein (15:18)
al (15:31)
et (15:28)
0 errors ✔ | 0 warnings ✔ | 7 notes ✖
Notes
No notes received seem critical:
- Names and references in DESCRIPTION are not misspelled. These 3 notes can be disregarded.
- NULL file/directory note is likely an rhub issue that can be ignored according to rhub maintainers
- The 'lastMiKTeXException' note may be due to a MikTeX bug; we have ignored this note for past releases without issue.
- The example with elapsed time > 5s only happens in some test environments, and the elapsed time of 7.4 seconds is not excessive.
- The HTML version of the manual is able to be validated locally and in environments other than fedora-clang-devel.
Gompertztrunc 0.1.1
First submission of a patch release. Requested by CRAN because of a new note during the "HTML version of manual" check, due to a recent change to r-devel. Gompertztrunc 0.1.0 generates the following note on r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, and r-devel-linux-x86_64-fedora-clang:
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problem:
pipe.html:40:9 (pipe.Rd:12): Warning: \<code> anchor "lhs" already defined
pipe.html:44:9 (pipe.Rd:14): Warning: \<code> anchor "rhs" already defined
The imported pipe function was refactored and its documentation fixed so that there are no duplicated \item entries in the html manual. Results from rechecking the package are below.
Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD check results
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
checking examples ... [10s/20s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
convert_hazards_to_ex 3.07 0.136 6.459
❯ On fedora-clang-devel (r-devel)
checking HTML version of manual ... NOTE
Skipping checking HTML validation: no command 'tidy' found
0 errors ✔ | 0 warnings ✔ | 2 notes ✖
Notes
The example with elapsed time > 5s only happens in some test environments, and the elapsed time of 6.5 seconds is not excessive. The HTML version of the manual is able to validated locally and in environments other than fedora-clang-devel.
Gompertztrunc 0.1.0
Second Submission to CRAN, version 0.1.0
The following changes have been made in response to CRAN's comments:
-
Reworded the description so that it does not start with "Functions for"
-
Write less information to the console by changing print() statements to warning()
or encompassing with an if verbose() block. Also, diagnostic_plot() and diagnostic_plot_hazard()
functions were altered to produce fewer internal warnings and/or to not automatically
write internal ggplot messages to the console.
The suggestion to add references was optional; we have not done so for this release.
test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD Check results
On windows-x86_64-devel (r-devel), ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
checking CRAN incoming feasibility ... NOTE
Maintainer: 'Maria Osborne mariaosborne@berkeley.edu'
New submission
On fedora-clang-devel (r-devel)
checking HTML version of manual ... NOTE
Skipping checking HTML validation: no command 'tidy' found
0 errors ✓ | 0 warnings ✓ | 2 notes x
Notes
- The note about HTML validation only occurs on fedora-clang-devel and does not seem critical. The HTML version of the manual is able to be validated on windows-x86_64-devel and locally.
Reply from CRAN for first submission
-
Please do not start the description with "This package", package name, title or
"Functions for".
-
If there are references describing the methods in your package, please
add these in the description field of your DESCRIPTION file in the form
authors (year)
authors (year)
authors (year, ISBN:...)
or if those are not available:
with no space after 'doi:', 'arXiv:', 'https:' and angle brackets for
auto-linking.
(If you want to add a title as well please put it in quotes: "Title")
-
You write information messages to the console that cannot be easily
suppressed. It is more R like to generate objects that can be used to
extract the information a user is interested in, and then print() that
object.
Instead of print() rather use message()/warning() or if(verbose)cat(..)
(or maybe stop()) if you really have to write text to the console.
(except for print, summary, interactive functions)
First Submission to CRAN, version 0.1.0
The first submission of the gompertztrunc package
Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD check results
On windows-x86_64-devel (r-devel), ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
checking CRAN incoming feasibility ... NOTE
Maintainer: 'Maria Osborne mariaosborne@berkeley.edu'
New submission
On windows-x86_64-devel (r-devel)
checking for detritus in the temp directory ... NOTE
Found the following files/directories:
'lastMiKTeXException'
0 errors ✓ | 0 warnings ✓ | 2 notes x
Notes:
* The 'lastMiKTeXException' note only occurs when build is checked on windows-x86_64-devel. After searching online, it seems that this note is possibly due to a MiKTeX bug during checking and can probably be ignored.
caseybreen/gompertztrunc documentation built on March 3, 2024, 1:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Gompertztrunc 0.1.2
First submission of a patch release. Features of this release include:
-
Reference added to description.
-
Fixed a problem with computation of standard errors in
gompertz_mle(). -
Other small bug fixes in
gompertz_mle()and package vignette.
Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD check results
❯ On windows-x86_64-devel (r-devel) checking CRAN incoming feasibility ... [16s] NOTE Maintainer: 'Maria Osborne mariaosborne@berkeley.edu'
Possibly misspelled words in DESCRIPTION: Goldstein (15:18) al (15:31) et (15:28)
❯ On windows-x86_64-devel (r-devel) checking for non-standard things in the check directory ... NOTE Found the following files/directories: ''NULL''
❯ On windows-x86_64-devel (r-devel) checking for detritus in the temp directory ... NOTE Found the following files/directories: 'lastMiKTeXException'
❯ On ubuntu-gcc-release (r-release) checking CRAN incoming feasibility ... [8s/24s] NOTE Maintainer: ‘Maria Osborne mariaosborne@berkeley.edu’
Possibly misspelled words in DESCRIPTION: al (15:31) et (15:28) Goldstein (15:18)
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel) checking examples ... [7s/19s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed convert_hazards_to_ex 2.699 0.12 7.357
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel) checking HTML version of manual ... NOTE Skipping checking HTML validation: no command 'tidy' found
❯ On fedora-clang-devel (r-devel) checking CRAN incoming feasibility ... [9s/34s] NOTE Maintainer: ‘Maria Osborne mariaosborne@berkeley.edu’
Possibly misspelled words in DESCRIPTION: Goldstein (15:18) al (15:31) et (15:28)
0 errors ✔ | 0 warnings ✔ | 7 notes ✖
Notes
No notes received seem critical: - Names and references in DESCRIPTION are not misspelled. These 3 notes can be disregarded. - NULL file/directory note is likely an rhub issue that can be ignored according to rhub maintainers - The 'lastMiKTeXException' note may be due to a MikTeX bug; we have ignored this note for past releases without issue. - The example with elapsed time > 5s only happens in some test environments, and the elapsed time of 7.4 seconds is not excessive. - The HTML version of the manual is able to be validated locally and in environments other than fedora-clang-devel.
Gompertztrunc 0.1.1
First submission of a patch release. Requested by CRAN because of a new note during the "HTML version of manual" check, due to a recent change to r-devel. Gompertztrunc 0.1.0 generates the following note on r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, and r-devel-linux-x86_64-fedora-clang:
Check: HTML version of manual Result: NOTE Found the following HTML validation problem: pipe.html:40:9 (pipe.Rd:12): Warning: \<code> anchor "lhs" already defined pipe.html:44:9 (pipe.Rd:14): Warning: \<code> anchor "rhs" already defined
The imported pipe function was refactored and its documentation fixed so that there are no duplicated \item entries in the html manual. Results from rechecking the package are below.
Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD check results
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel) checking examples ... [10s/20s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed convert_hazards_to_ex 3.07 0.136 6.459
❯ On fedora-clang-devel (r-devel) checking HTML version of manual ... NOTE Skipping checking HTML validation: no command 'tidy' found
0 errors ✔ | 0 warnings ✔ | 2 notes ✖
Notes
The example with elapsed time > 5s only happens in some test environments, and the elapsed time of 6.5 seconds is not excessive. The HTML version of the manual is able to validated locally and in environments other than fedora-clang-devel.
Gompertztrunc 0.1.0
Second Submission to CRAN, version 0.1.0
The following changes have been made in response to CRAN's comments:
-
Reworded the description so that it does not start with "Functions for"
-
Write less information to the console by changing
print()statements towarning()or encompassing with anif verbose()block. Also,diagnostic_plot()anddiagnostic_plot_hazard()functions were altered to produce fewer internal warnings and/or to not automatically write internal ggplot messages to the console.
The suggestion to add references was optional; we have not done so for this release.
test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD Check results
On windows-x86_64-devel (r-devel), ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel) checking CRAN incoming feasibility ... NOTE Maintainer: 'Maria Osborne mariaosborne@berkeley.edu'
New submission
On fedora-clang-devel (r-devel) checking HTML version of manual ... NOTE Skipping checking HTML validation: no command 'tidy' found
0 errors ✓ | 0 warnings ✓ | 2 notes x
Notes
- The note about HTML validation only occurs on fedora-clang-devel and does not seem critical. The HTML version of the manual is able to be validated on windows-x86_64-devel and locally.
Reply from CRAN for first submission
-
Please do not start the description with "This package", package name, title or "Functions for".
-
If there are references describing the methods in your package, please add these in the description field of your DESCRIPTION file in the form authors (year) authors (year) authors (year, ISBN:...) or if those are not available: with no space after 'doi:', 'arXiv:', 'https:' and angle brackets for auto-linking. (If you want to add a title as well please put it in quotes: "Title")
-
You write information messages to the console that cannot be easily suppressed. It is more R like to generate objects that can be used to extract the information a user is interested in, and then print() that object. Instead of print() rather use message()/warning() or if(verbose)cat(..) (or maybe stop()) if you really have to write text to the console. (except for print, summary, interactive functions)
First Submission to CRAN, version 0.1.0
The first submission of the gompertztrunc package
Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
R CMD check results
On windows-x86_64-devel (r-devel), ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel) checking CRAN incoming feasibility ... NOTE
Maintainer: 'Maria Osborne mariaosborne@berkeley.edu' New submission
On windows-x86_64-devel (r-devel) checking for detritus in the temp directory ... NOTE Found the following files/directories: 'lastMiKTeXException'
0 errors ✓ | 0 warnings ✓ | 2 notes x
Notes: * The 'lastMiKTeXException' note only occurs when build is checked on windows-x86_64-devel. After searching online, it seems that this note is possibly due to a MiKTeX bug during checking and can probably be ignored.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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