In cautree/qa:

sample_meta_data = readr::read_csv("/an/vital/metabolomics/QA/yliu/data_for_QA_package/sample_meta_data.csv")

sample_info_data = readr::read_csv("/an/vital/metabolomics/QA/yliu/data_for_QA_package/sample_info_data.csv")

sample_trt_data = readr::read_csv("/an/vital/metabolomics/QA/yliu/data_for_QA_package/trt_data.csv")

sample_clin_data = readr::read_csv("/an/vital/metabolomics/QA/yliu/data_for_QA_package/sample_clin_data.csv")


#
pp_meta_data = readr::read_csv( "/an/vital/metabolomics/QA/yliu/data_for_QA_package/pp_meta_data.csv")

sample_delta_data = readr::read_csv("/an/vital/metabolomics/QA/yliu/data_for_QA_package/sample_delta_data.csv")


names(sample_meta_data)[1:5]


sample_meta_data$X1= NULL

sample_info_data$X1= NULL

sample_trt_data$X1= NULL

pp_meta_data$X1 =NULL

sample_clin_data$X1= NULL

sample_delta_data$X1 =NULL

list.files() [1] "clinical_data.csv" "data_for_QA_package.Rproj"
[3] "data.csv" "QA_package_data.Rmd"
[5] "sample_info_data.csv" "sample_meta_data.csv"
[7] "statTarget_data" "trt_data.csv"
[9] "with_plate_well_data_with_newly_annotated_eico180111_VITAL_no_pp.csv" "with_plate_well_data_with_newly_annotated_eico180111_VITAL.csv"
getwd() [1] "/an/vital/metabolomics/QA/yliu/data_for_QA_package"

cautree/qa documentation built on April 9, 2023, 12:20 a.m.