API for cavei/guessMyLOI
Guess Loss Of Imprinting
| Global functions | |
|---|---|
| .filterSamples | Source code |
| callHetero | Man page Source code |
| callHeteroSNPperGene | Man page Source code |
| checkNames | Source code |
| clipToValues | Man page Source code |
| collapseObject | Man page Source code |
| collectGeneAnnotation | Source code |
| computeAlleleRatios | Man page Source code |
| computeHeteroScore | Man page Source code |
| createArtificialHeteroGene | Source code |
| createDatasets | Source code |
| drawChromosome | Source code |
| extractFirstSnpPositionByGene | Man page Source code |
| filterBySample | Man page Source code |
| filterSamples | Man page Source code |
| filter_by_gene | Man page Source code |
| filter_by_gene.ratios | Man page Source code |
| filter_by_genes | Man page Source code |
| filter_by_overall_depth | Man page Source code |
| filter_columns | Man page Source code |
| filter_matrix_by_genes | Man page Source code |
| filter_rows | Man page Source code |
| guessApp | Man page Source code |
| guessGene | Source code |
| guessSomatic | Source code |
| guessXCI | Man page Source code |
| mergeHeteroGeneObjs | Man page Source code |
| nonUsedGenes | Man page Source code |
| plotAllelicImbalance | Man page Source code |
| plotAllelicRatios | Man page Source code |
| plotChrXwithSNPs | Man page Source code |
| plot_guessedLOI | Man page Source code |
| processNonSexualData | Man page Source code |
| processSexualData | Man page Source code |
| ratioInString | Man page Source code |
| readFromVCF | Man page Source code |
| readGATK.AllelicImbalance | Man page Source code |
| removeHg38PsudosomalRegion | Man page Source code |
| removeM38PsudosomalRegion | Man page Source code |
| setNA2FALSE | Man page Source code |
| setNA2TRUE | Man page Source code |
| sortByGenes | Man page Source code |
| sortGeneByPosition | Man page Source code |
