input_function: Read allelic expression file
In cavei/guessMyLOI: Guess Loss Of Imprinting
Description
Usage
Arguments
Value
Description
Read allelic expression file
Read allelic expression from VCF
Usage
1
2
3
readGATK.AllelicImbalance(file, annotCol = 7)
readFromVCF(file.vcf)
Arguments
file
a file name
annotCol
the column number where the annotations ends
file.vcf
a vcf file name
Value
a list with
alleleCounts
each row is an allele (SNP) expression value
alleleAnnot
allele annotations
positionUID
uinque id for snp allele
cavei/guessMyLOI documentation built on May 24, 2019, 7:14 a.m.
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Description Usage Arguments Value
Description
Read allelic expression file
Read allelic expression from VCF
Usage
1 2 3 | readGATK.AllelicImbalance(file, annotCol = 7)
readFromVCF(file.vcf)
|
Arguments
file |
a file name |
annotCol |
the column number where the annotations ends |
file.vcf |
a vcf file name |
Value
a list with
alleleCounts |
each row is an allele (SNP) expression value |
alleleAnnot |
allele annotations |
positionUID |
uinque id for snp allele |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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