Man pages for cayek/BioCompToolsR
| admixture2popSimulationWrapper | Sample 2 pop simulated with ms |
| admixture2popSimulationWrapperWithOutlier | Sample 2 pop simulated with ms. With outlier loci |
| buildOnPatator | build the package on patator |
| cleanAnswer | Compute true power |
| computeRuntime | compute run time |
| concatenateData | Take dataset generated by a sampler an concatenate |
| ddl.result | Download contest result |
| duplitedRowDetection | cheater |
| fdrControl | Fdr control with benjamini hochberg |
| fdrpreCalc | compute precision and recall |
| filterbest | keep only best submision by method and the |
| freqInPop | Compute allele frequency for each SNIPs in each pop. Returns... |
| Fst2Pop | Compute the Fst of haplotype between 2 pops. |
| FstOF | Compute the Fst of haplotype with OF formula |
| lfmm_logit_sample | Sample genotype and environmental gradient. |
| manhattanPlot | Manhattan plot |
| multiplot | Multiple graphs on one page |
| openPatator | open a R session on patator |
| plotPc | Plot pc1 and pc2 |
| plotSNPfoldedspectrum | Plot folded allele frequency spectrum |
| plotSNPspectrum | The allele frequency spectrum |
| power_fdr | Power and Fdr |
| QfromPop | Compute ancestry coeficient from pop allocation |
| removeNoise | noise |
| renderOnPatator | Render Rmarkdown on patator |
| rmse | compute the root mean square error |
| rmse_withBestPermutation | Compute the root mean square error between matrix by... |
| rmse_withBestPermutation.greedy | Compute the root mean square error between matrix by... |
| runPatator | load code on patator |
| RunsNMF | An sNMF wrapper for a good integration to R |
| sample_correlated_X | Sample a normaly distributed variable X such that cor(X,Y) =... |
| SFdS.runOnSimu | for SFdS paper |
| SFdS.runOnTrueData | for SFdS paper |
| SFdS.runOnTrueData.time | for SFdS paper |
| SNPfoldedspectrum | The folded allele frequency spectrum |
| SNPspectrum | The allele frequency spectrum |
| sortWinner | sort |
| trueFDR | Compute true FDR |
| truePower | Compute true power |
| trueTPandFDR | Fdr control with benjamini hochgerg. This function compute... |
| winner | give the winner |
