admixture2popSimulationWrapper | Sample 2 pop simulated with ms |

admixture2popSimulationWrapperWithOutlier | Sample 2 pop simulated with ms. With outlier loci |

buildOnPatator | build the package on patator |

cleanAnswer | Compute true power |

computeRuntime | compute run time |

concatenateData | Take dataset generated by a sampler an concatenate |

ddl.result | Download contest result |

duplitedRowDetection | cheater |

fdrControl | Fdr control with benjamini hochberg |

fdrpreCalc | compute precision and recall |

filterbest | keep only best submision by method and the |

freqInPop | Compute allele frequency for each SNIPs in each pop. Returns... |

Fst2Pop | Compute the Fst of haplotype between 2 pops. |

FstOF | Compute the Fst of haplotype with OF formula |

lfmm_logit_sample | Sample genotype and environmental gradient. |

manhattanPlot | Manhattan plot |

multiplot | Multiple graphs on one page |

openPatator | open a R session on patator |

plotPc | Plot pc1 and pc2 |

plotSNPfoldedspectrum | Plot folded allele frequency spectrum |

plotSNPspectrum | The allele frequency spectrum |

power_fdr | Power and Fdr |

QfromPop | Compute ancestry coeficient from pop allocation |

removeNoise | noise |

renderOnPatator | Render Rmarkdown on patator |

rmse | compute the root mean square error |

rmse_withBestPermutation | Compute the root mean square error between matrix by... |

rmse_withBestPermutation.greedy | Compute the root mean square error between matrix by... |

runPatator | load code on patator |

RunsNMF | An sNMF wrapper for a good integration to R |

sample_correlated_X | Sample a normaly distributed variable X such that cor(X,Y) =... |

SFdS.runOnSimu | for SFdS paper |

SFdS.runOnTrueData | for SFdS paper |

SFdS.runOnTrueData.time | for SFdS paper |

SNPfoldedspectrum | The folded allele frequency spectrum |

SNPspectrum | The allele frequency spectrum |

sortWinner | sort |

trueFDR | Compute true FDR |

truePower | Compute true power |

trueTPandFDR | Fdr control with benjamini hochgerg. This function compute... |

winner | give the winner |

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