load_tax: Reads in a file containing taxonomy data and performs basic...

In cb-42/cbmbtools: R Functions for Facilitating Microbiome Analyses

Description

Reads in a file containing taxonomy data and performs basic processing.

Usage

load_tax(tax_file, otu_good = NULL)

Arguments

tax_file	A cons.taxonomy file resulting from processing via mothur.
otu_good	An optional matrix containing trimmed OTU count data.

Value

Returns a dataframe containing taxonomy data, optionally subset by the OTUs within 'otu_good'.

Examples

load_tax("miseq_mothur.cons.taxonomy")
load_tax("miseq_mothur.cons.taxonomy", otu_good)

cb-42/cbmbtools documentation built on Jan. 9, 2021, 1:38 a.m.