API for cbg-ethz/knockdown
Statistical Analysis of High-Throughput Genetic Perturbation Screens
| Global functions | |
|---|---|
| .check.formula | Source code |
| .diffuse | Source code |
| .do.mrw | Source code |
| .gather.locfdr | Source code |
| .ge.fdrs | Source code |
| .get.graph | Source code |
| .hm | Source code |
| .hm.fit | Source code |
| .hm.model.data | Source code |
| .init.starting.distribution | Source code |
| .localfdr | Source code |
| .plot.bars | Source code |
| .plot.bars.diff | Source code |
| .plot.effect.matrices.perturbation.analysed.hm | Source code |
| .plot.perturbation.hm.analysed | Source code |
| .ranef | Source code |
| .requiredDataCols | Source code |
| .significance.mrw | Source code |
| HMAnalysedPerturbationData-class | Man page |
| NetworkAnalysedPerturbationData-class | Man page |
| PerturbationData-class | Man page |
| bootstrap | Man page Source code |
| bootstrap.PerturbationData | Source code |
| bootstrap.tbl_df | Source code |
| check.columns | Source code |
| colors | Source code |
| conf.int | Source code |
| dataSet | Man page |
| dataSet,AbstractAnalysedPerturbationData-method | Man page |
| dataSet,PerturbationData-method | Man page |
| diffuse | Man page |
| diffuse,HMAnalysedPerturbationData-method | Man page |
| effect.matrices | Source code |
| effect.matrices.HMAnalysedPerturbationData | Source code |
| filter | Man page Source code |
| filter.PerturbationData | Source code |
| ge.fdrs | Source code |
| geneEffects | Man page |
| geneEffects,AbstractAnalysedPerturbationData-method | Man page |
| graph | Man page |
| graph,NetworkAnalysedPerturbationData-method | Man page |
| hm | Man page |
| hm,PerturbationData-method | Man page |
| inference | Man page |
| inference,AbstractAnalysedPerturbationData-method | Man page |
| inferenceTypes | Source code |
| isBootstrapped | Man page |
| isBootstrapped,AbstractAnalysedPerturbationData-method | Man page |
| leuniq | Source code |
| modelFit | Man page |
| modelFit,HMAnalysedPerturbationData-method | Man page |
| mrw | Source code |
| nestedGeneEffects | Man page |
| nestedGeneEffects,HMAnalysedPerturbationData-method | Man page |
| nge.fdrs | Source code |
| params | Man page |
| params,AbstractAnalysedPerturbationData-method | Man page |
| perturbatr-package | Man page |
| plot.HMAnalysedPerturbationData | Source code |
| plot.NetworkAnalysedPerturbationData | Man page Source code |
| plot.PerturbationData | Man page Source code |
| rbind.PerturbationData | Man page Source code |
| read.graph | Source code |
| rnaiscreen | Man page |
| setModelData | Man page |
| setModelData,PerturbationData-method | Man page |
