Man pages for cbg-ethz/mnem
Mixture Nested Effects Models
| app | Processed scRNAseq from pooled CRISPR screens |
| bootstrap | Bootstrap. |
| clustNEM | Cluster NEM. |
| createApp | Creating app data. |
| fitacc | Simulation accuracy. |
| fuzzyindex | Calculate fuzzy ground truth. |
| getAffinity | Calculate responsibilities. |
| getIC | Calculate negative penalized log likelihood. |
| hamSim | Accuracy for two phis. |
| mnem | Mixture NEMs - main function. |
| mnemh | Hierarchical mixture. |
| mnemk | Learn the number of components K and optimize the mixture. |
| moreboxplot | Boxplot with scatter and density options |
| nem | Implementation of the original NEM |
| plot.bootmnem | Plot bootstrap mnem result. |
| plotConvergence | Plot convergence of EM |
| plotConvergence.mnem | Plot convergence of EM |
| plotDnf | Plot disjunctive normal form. |
| plot.mnem | Plot mnem result. |
| plot.mnem_mcmc | Plot mnem_mcmc result. |
| plot.mnem_sim | Plot simulated mixture. |
| scoreAdj | Network score |
| simData | Simulate data. |
| transitive.closure | Transitive closure of a directed acyclic graph (dag) |
| transitive.reduction | Transitive reduction |
