rDGIdbFilters: Filter options for rDGIdb queries.

In cbg-ethz/rDGIdb: R Wrapper for DGIdb

Description

The gene categories, interaction types, and source databases available to filter queries with queryDGIdb.

Usage

geneCategories()

interactionTypes()

sourceDatabases()

Value

geneCategories returns a character vector of available gene categories which can be used to filter DGIdb queries with queryDGIdb.

interactionTypes returns a character vector of available interaction types which can be used to filter DGIdb queries with queryDGIdb.

sourceDatabases returns a character vector of available source databases which can be used to filter DGIdb queries with queryDGIdb.

Author(s)

Thomas Thurnherr <[e-mail]>

References

Wagner AH, Coffman AC, Ainscough BJ, Spies NC, Skidmore ZL, Campbell KM, Krysiak K, Pan D, McMichael JF, Eldred JM, Walker JR, Wilson RK, Mardis ER, Griffith M, Griffith OL. DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic Acids Research. 2016 Jan 4;44(D1):D1036-44. doi:10.1093/nar/gkv1165.

See Also

queryDGIdb, rDGIdbResult, plotInteractionsBySource

Examples

geneCategories()
interactionTypes()
sourceDatabases()
res <- queryDGIdb(genes = "AP1",
            interactionTypes = interactionTypes(),
            geneCategories = geneCategories(),
            sourceDatabases = sourceDatabases())

cbg-ethz/rDGIdb documentation built on May 13, 2019, 2:03 p.m.