ex_hapMatSmall_data: Example small dataset
In cbhagya/perfectphyloR: Reconstruct Perfect Phylogenies from DNA Sequence Data
Description
A subset of ex_hapMat_data, containing 10 sequences (haplotypes) with 20 SNVs.
Usage
1
Format
A list of ten haplotypes with the physical positions of each SNV.
- hapmat
A matrix of 0's and 1's, with rows representing haplotypes and columns representing SNVs.
- snvNames
A vector of names of SNVs for the columns of hapmat.
- hapNames
A vector of names of haplotypes for the rows of hapmat.
- posns
a numeric vector specifying the genomic positions (e.g. in base pairs) of SNVs in the
columns of hapmat.
cbhagya/perfectphyloR documentation built on Aug. 1, 2021, 1:17 p.m.
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Description
A subset of ex_hapMat_data, containing 10 sequences (haplotypes) with 20 SNVs.
Usage
1 |
Format
A list of ten haplotypes with the physical positions of each SNV.
- hapmat
A matrix of 0's and 1's, with rows representing haplotypes and columns representing SNVs.
- snvNames
A vector of names of SNVs for the columns of
hapmat.- hapNames
A vector of names of haplotypes for the rows of
hapmat.- posns
a numeric vector specifying the genomic positions (e.g. in base pairs) of SNVs in the columns of
hapmat.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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