API for cbl-imagine/CellID
Unbiased Extraction of Single Cell Identity using Multiple Correspondence Analysis
| Global functions | |
|---|---|
| CellID | Man page |
| CellID-package | Man page |
| DimPlotMC | Man page Source code |
| DistSort | Man page Source code |
| GO_biological | Man page |
| GetCellGeneDistance | Man page Source code |
| GetCellGeneDistance.Seurat | Man page Source code |
| GetCellGeneDistance.SingleCellExperiment | Man page Source code |
| GetCellGeneRanking | Man page Source code |
| GetCellGeneRanking.Seurat | Man page Source code |
| GetCellGeneRanking.SingleCellExperiment | Man page Source code |
| GetCellGeneSet | Man page Source code |
| GetCellGeneSet.Seurat | Man page Source code |
| GetCellGeneSet.SingleCellExperiment | Man page Source code |
| GetGSEAMatrix | Man page Source code |
| GetGeneCellCoordinates | Man page Source code |
| GetGeneCellCoordinates.Seurat | Source code |
| GetGeneCellCoordinates.SingleCellExperiment | Source code |
| GetGroupCoordinates | Man page Source code |
| GetGroupCoordinates.Seurat | Man page Source code |
| GetGroupCoordinates.SingleCellExperiment | Man page Source code |
| GetGroupCoordinates.matrix | Man page Source code |
| GetGroupGeneDistance | Man page Source code |
| GetGroupGeneDistance.Seurat | Man page Source code |
| GetGroupGeneDistance.SingleCellExperiment | Man page Source code |
| GetGroupGeneRanking | Man page Source code |
| GetGroupGeneRanking.Seurat | Man page Source code |
| GetGroupGeneRanking.SingleCellExperiment | Man page Source code |
| GetGroupGeneSet | Man page Source code |
| GetGroupGeneSet.Seurat | Man page Source code |
| GetGroupGeneSet.SingleCellExperiment | Man page Source code |
| Hallmark | Man page |
| HgProteinCodingGenes | Man page |
| MCAStep1 | Source code |
| MCAStep2 | Source code |
| MgProteinCodingGenes | Man page |
| RunCellGSEA | Man page Source code |
| RunCellGSEA.Seurat | Man page Source code |
| RunCellGSEA.SingleCellExperiment | Man page Source code |
| RunCellHGT | Man page Source code |
| RunCellHGT.Seurat | Man page Source code |
| RunCellHGT.SingleCellExperiment | Man page Source code |
| RunGroupGSEA | Man page Source code |
| RunGroupGSEA.Seurat | Man page Source code |
| RunGroupGSEA.SingleCellExperiment | Man page Source code |
| RunMCA | Man page Source code |
| RunMCA.Seurat | Man page Source code |
| RunMCA.SingleCellExperiment | Man page Source code |
| RunMCA.matrix | Man page Source code |
| RunMCDMAP | Man page Source code |
| RunMCDMAP.Seurat | Man page Source code |
| RunMCDMAP.SingleCellExperiment | Man page Source code |
| RunMCTSNE | Man page Source code |
| RunMCTSNE.Seurat | Man page Source code |
| RunMCTSNE.SingleCellExperiment | Man page Source code |
| RunMCUMAP | Man page Source code |
| RunMCUMAP.Seurat | Man page Source code |
| RunMCUMAP.SingleCellExperiment | Man page Source code |
| checkCellIDArg | Man page Source code |
| checkCellIDArg.Seurat | Man page Source code |
| checkCellIDArg.SingleCellExperiment | Man page Source code |
| fastPDist | Source code |
| fgseaCellID | Man page Source code |
| import | Man page Source code |
| integrateGSEASeurat | Man page Source code |
| pairDist | Man page Source code |
| plotReducedDimMC | Man page Source code |
| setDimMCSlot | Man page Source code |
| setDimMCSlot.Seurat | Man page Source code |
| setDimMCSlot.SingleCellExperiment | Man page Source code |
| seuratPbmc | Man page |
