Description Usage Arguments Value
Check for CellID arguments
1 2 3 4 5 6 7 8 9 | checkCellIDArg(X, group.by, reduction, dims, features, cells)
## S3 method for class 'Seurat'
checkCellIDArg(X, group.by = NULL, reduction, dims,
features = NULL, cells = NULL)
## S3 method for class 'SingleCellExperiment'
checkCellIDArg(X, reduction, dims,
features = NULL, cells = NULL, group.by = NULL)
|
X |
Seurat or SingleCell Experiment Object |
group.by |
Name of meta.data or ColData column. |
reduction |
Which dimensionality reduction to use, must be based on MCA. |
dims |
A vector of integers indicating which dimensions to use of specified reduction embeddings and loadings. |
features |
Character vector of feature names to subset feature coordinates. If not specified will take all features available from specified reduction loadings. |
cells |
Character vector of cell names to subset cell coordinates. If not specified will take all features available from specified reduction Embeddigns. |
list of corrected arguments if no error is thrown.
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