plt_faith: Plot feature Faith's PD ancestral lineages onto a species...
In cedatorma/recpd: RecPD
plt_faith R Documentation
Plot feature Faith's PD ancestral lineages onto a species phylogenetic tree.
Description
Plot feature Faith's PD ancestral lineages onto a species phylogenetic tree.
Usage
plt_faith(res, feat, include.root = TRUE)
Arguments
res
A results data.frame generated by recpd_calc().
feat
A user-provided array of length 2, containing named features, or
indices, corresponding to the feature column/rows of the recpd_calc()
results data.frame.
include.root
logical. Include branches from the root of the tree
(TRUE) or the MRCA of the presence state tips (FALSE).
Value
A ggtree object.
See Also
plt_recpd
cedatorma/recpd documentation built on April 25, 2022, 10:14 p.m.
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| plt_faith | R Documentation |
Plot feature Faith's PD ancestral lineages onto a species phylogenetic tree.
Description
Plot feature Faith's PD ancestral lineages onto a species phylogenetic tree.
Usage
plt_faith(res, feat, include.root = TRUE)
Arguments
res |
A results data.frame generated by recpd_calc(). |
feat |
A user-provided array of length 2, containing named features, or indices, corresponding to the feature column/rows of the recpd_calc() results data.frame. |
include.root |
logical. Include branches from the root of the tree (TRUE) or the MRCA of the presence state tips (FALSE). |
Value
A ggtree object.
See Also
plt_recpd
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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