In certara/pmxpartabc: Parameter Tables for PMx Analyses

Example with all information in the yaml file (except from parameter name). No bootstrap information available (ie, CI calculated with normal distribution assumptions).

knitr::opts_chunk$set(echo = TRUE)

Setup environment

# ----- Load package -----
library(pmxpartabc)

# ----- Define directory and file names -----
run_dir    <- file.path(system.file(package = "pmxpartabc"), "examples")
run_prefix <- "run"
runno     <-  "6"
yaml.file.name <- file.path(system.file(package = "pmxpartabc"), "meta.yaml")

Parameter table 1 - using yaml file

output <- parframe2setup(run_dir, 
                      run_prefix, 
                      runno, 
                      conf.level = 0.95, 
                      min_suc = TRUE, 
                      yaml.file = TRUE, 
                      yaml.file.name = yaml.file.name)

tab=parframe(out=output[[1]], meta=output[[2]])  

tab1=pmxpartab(tab, output[[2]], columns=c(value="Estimate", rse="RSE%", ci95="95%CI", shrinkage="Shrinkage"))

print(tab1)