Man pages for cfree14/splink
Covariate-linked biomass dynamic models
| build_sp_curves | Build surplus production curves |
| build_sr_curves | Build stock recruit curves |
| calc_msy | Calculate covariate-linked MSY over time |
| calc_sp | Calculate surplus production time series |
| compare_models | Compare models with AIC |
| fit_sp | Fit surplus production model using maximum likelihood... |
| fit_sp_base | Fit surplus production model using maximum likelihood... |
| fit_sp_linked_fixed | Fit surplus production model using maximum likelihood... |
| fit_sp_linked_random | Fit surplus production model using maximum likelihood... |
| fit_sp_nls | Fit surplus production model using NLS estimation |
| fit_sr | Fit stock recruit model using maximum likelihood estimation |
| fit_sr_base | Fit stock recruit model using maximum likelihood estimation |
| fit_sr_linked_fixed | Fit stock recruit model using maximum likelihood estimation |
| fit_sr_linked_random | Fit stock recruit model using maximum likelihood estimation |
| get_results | Extracts the parameter estimates and confidence intervals... |
| plot_fits | Plot surplus production model fits |
| plot_fits_nls | Plot surplus production model fits |
| plot_fits_sp | Plot surplus production model fits |
| plot_fits_sp_linked | Plot covariate-linked surplus production model fits |
| plot_fits_sr | Plot stock recruit model fits |
| plot_fits_sr_linked | Plot covariate-linked stock recruit fits |
| plot_raw | Plot surplus production data |
| plot_results | Plot parameter estimates and confidence intervals |
| plot_thetas | Plot theta estimates and confidence intervals |
| prep_data | Prepare data for fitting biomass dynamics models |
| ram | RAM biomass and catch time series |
| ram_ne | New England fish stock data |
