mbrGet-methods: Get information from individual slots in MBR object.

Description Usage Arguments Value Examples

Description

Get information from individual slots in an MBR object and any available results from previous analysis.

Usage

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## S4 method for signature 'MBR'
mbrGet(object, what = "status")

Arguments

object

A preprocessed object of class MBR

what

a single character value specifying which information should be retrieved from the slots. Options: "TNI1", "TNI2", "testedElementsTNI1", "testedElementsTNI2", "dualRegulons", "results", "para", "summary", "status", "motifsInformation" and "hyperResults"

Value

A slot content from a object of class 'MBR' MBR object

Examples

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data("dt4rtn", package = "RTN")
gexp <- dt4rtn$gexp
annot <- dt4rtn$gexpIDs
tfs1 <- dt4rtn$tfs[c("IRF8","IRF1","PRDM1","AFF3","E2F3")]
tfs2 <- dt4rtn$tfs[c("HCLS1","STAT4","STAT1","LMO4","ZNF552")]
##---mbrPreprocess
rmbr <- mbrPreprocess(gexp=gexp, regulatoryElements1 = tfs1, 
regulatoryElements2=tfs2, gexpIDs=annot)
##---get the 'TNI1' slot using 'mbrGet'
tni1 <- mbrGet(rmbr, what="TNI1")

chagasVinicius/RTNduals documentation built on May 13, 2019, 3:10 p.m.