ChIP-Seq Statistical Power

bin.data | An artificially constructed BinData-class class object. |

bindata.chr1 | An artificially constructed data.frame object that can be... |

BinData-class | An S-4 class containing the model fit information for a CSSP... |

bindcount | Compute the number of reads overlapping the specified... |

bindcount.chr | Compute the number of reads overlapping the specified... |

bindpos | An artificially constructed dataset containing enrichment... |

callpeak-methods | Call enriched bins based on the CSSP model. |

createBinData | Create a BinData object by merging lists of ChIP and input... |

CSSPFit-class | An S-4 class containing the model fit information for CSSP... |

cssp.fit-methods | Fit the CSSP Model. |

cssp.power-methods | Compute the weighted average of bin-wise power conditioning... |

cssp.sim-methods | Simulate bin binding intensities according to the posterior... |

fit.freq-methods | Compute the estimated frequency for ChIP counts based on the... |

pBBT-methods | Compute the cumulative probability of the bin-level poisson... |

peakcount | Compute the number of aligned reads overlapping the specified... |

peakcount.chr | Compute the number of aligned reads overlapping peaks for one... |

peakpos | An artificially generated dataset containing peak invervals... |

qBBT-methods | Compute the quantile estimate for the bin-level poisson... |

readBinFile | Read the bin-level text files containing ChIP and input... |

sampleFit | A "CSSPFit" class object containing the fitted CSSP model for... |

tag2bin | Convert the genome coordinates of aligned reads to bin-level... |

tag2bin.chr | Convert the genome coordinates of aligned reads to bin-level... |

tagdat_chip | An artificially constructed dataset containing genome... |

tagdat_input | An artificially constructed dataset containing genome... |

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