Man pages for chariff/cytometree
Automated Cytometry Gating and Annotation
| Annotation | Annotates cell populations found using CytomeTree. |
| BinaryTree | Builds a binary tree. |
| bootstrapCI | Bootstrapped Confidence Interval. |
| CytEM | E-M algorithm. |
| CytomeTree | Binary tree algorithm for cytometry data analysis. |
| cytometree-package | Binary tree algorithm for cytometry data analysis. |
| DLBCL | Diffuse large B-cell lymphoma data set from the FlowCAP-I... |
| FmeasureC | C++ implementation of the F-measure computation |
| FmeasureC_no0 | C++ implementation of the F-measure computation without the... |
| GaussMix | Bi-modal normal mixture distribution. |
| GaussMix2 | tri-modal normal mixture distribution. |
| HIPC | HIPC T cell data set from HIPC program, patient 12828. The... |
| KmeansOPT | Finds the partition which minimize the within-leaves sum of... |
| LeavesCenters | Computes means of leaves given cytomeTreeObj. |
| LeavesMedians | Computes medians of leaves given cytomeTreeObj. |
| Partition2gr | Computes N-1 possible partitions of ordered N into 2 subsets. |
| Partition3gr | Computes (N-1)*(N-2) possible partitions of N into 3 subsets. |
| plot_cytopop | Plot the cell count for each population using CytomeTree. |
| plot_graph | Plot the binary tree built using CytomeTree. |
| plot_nodes | Plot the distribution of the observed cells at each node of... |
| RetrievePops | Retrieve cell populations found using Annotation. |
| TreeAnnot | Returns the underlying annotation given a tree pattern. |
