read.osc: Read and return an OSC table.

Description Usage Arguments Author(s)

Description

Reads an OSC table from a file and returns a data frame.

Usage

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read.osc(file, drop.id = FALSE, drop.coord = FALSE, drop.norm = FALSE,
  simplify = FALSE, ...)

Arguments

file

File name of the OSC table.

drop.id

Deprecated, use drop.coord instead. Drops the id column.

drop.coord

Drops the coordinate columns column (by keeping all columns that have raw or norm in their name.

drop.norm

Drops the normalised expression values (any column whose name contains norm.).

simplify

Text to be remove from column names.

...

Other arguments are passed to read.table.

When IDs can be reconstituted from the OSC header and the feature coordinates, the data frame can be made lighter by dropping the id column with drop.id = TRUE.

Author(s)

Charles Plessy


charles-plessy/oscR documentation built on May 13, 2019, 3:31 p.m.