Man pages for charlieccarey/monarchr
Interface to Monarch Initiative API for Phenotype Ontology and Genotype
| bioentity_diseases_assoc_w_gene | Gets diseases associated with a gene. |
| bioentity_exp_anatomy_assoc_w_gene | Gets expression anatomy associated with a gene. |
| bioentity_gene_info | Gets gene info, like catgories and labels for a gene. |
| bioentity_genes_assoc_w_disease | Get genes associated with a disease |
| bioentity_homologs | Gets homologs for a gene. |
| bioentity_id_type | Gets info of a 'type' from an 'id' |
| bioentity_interactions_assoc_w_gene | Gets interactions associated with a gene. |
| bioentity_pathways_assoc_w_gene | Gets pathways associated with a gene. |
| bioentity_phenotypes_assoc_w_gene | Gets phenotypes associated with a gene. |
| biolink_search | Get a list of results matching a search term. |
| build_monarch_url | Builds URL for a monarch GET request. |
| clean_query | Converts R booleans to monarch_api values and drops NULL... |
| extract_be_content | Extracts simplified content from response. |
| extract_matching_phrases_from_lists | Finds phrases from list of things, like a list of dataframes. |
| flatten_list_of_strings | Flattens and concatenates character vectors in a list |
| list_of_paths_to_basenames | Extracts and concatenates (possibly multiple) basenames from... |
| monarch_api | Gets response from monarch API. |
| print.monarch_api | Print method for monarch_api. |
