In charlotte-ngs/lbgfs2021: Livestock Breeding and Genomics (ETHZ) - Fall Semester 2021

knitr::opts_chunk$set(echo = FALSE)
knitr::knit_hooks$set(hook_convert_odg = rmdhelp::hook_convert_odg)

```{bash, echo=FALSE, eval=FALSE}

bash - export as jpeg

ls -1 /Users/${USER}/Google\ Drive/Vorlesungen/LBG/FS2021/OHP-L10/* | while read p do CURPICFN=$(basename "$p") echo " * Copy $p ..." cp "$p" ~/Desktop echo " * Convert ~/Desktop/$CURPICFN ..." mogrify -resize 50% -format jpg ~/Desktop/$CURPICFN echo " * Remove ~/Desktop/$CURPICFN ..." rm ~/Desktop/$CURPICFN sleep 2 done

```r
# include jpg into this rmd
this_rmd_file <- ifelse(rstudioapi::isAvailable(),
                        rstudioapi::getActiveDocumentContext()$path,
                        whereami::thisfile())


vec_pics <- list.files(path = "~/Desktop", pattern = ".jpg$")
for (pidx in seq_along(vec_pics)){
   cur_pic <- vec_pics[pidx]
   cur_pic_nr <- as.integer(unlist(strsplit(fs::path_ext_remove(cur_pic), "_"))[2])
  cat("\n## OHP Picture ", pidx, "\n\n", sep = "", file = this_rmd_file, append = TRUE)
  cat("```r\n", sep = "", file = this_rmd_file, append = TRUE)
  cat("rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page", cur_pic_nr, ".odg')\n", sep = "", file = this_rmd_file, append = TRUE)
  cat("fs::file_delete(path = '~/Desktop/", cur_pic, "')\n", sep = "", file = this_rmd_file, append = TRUE)
  cat("```\n\n", file = this_rmd_file, append = TRUE)
}

# add out.width parameter
this_rmd_file <- ifelse(rstudioapi::isAvailable(),
                        rstudioapi::getActiveDocumentContext()$path,
                        whereami::thisfile())
con_rmd <- file(description = this_rmd_file)
vec_rmd <- readLines(con = con_rmd)
close(con = con_rmd)
vec_rmd <- vec_rmd[60:length(vec_rmd)]
# vec_pat <- grep(pattern = 'fig_path="odg", out.width="75%"}', vec_rmd)
vec_rpl <- gsub(pattern = 'fig_path="odg", out.width="100%"}', replacement = 'fig_path="odg", out.width="75%"}', vec_rmd)
cat(paste0(vec_rpl, collapse = "\n"), "\n", file = this_rmd_file, append = FALSE)

OHP Picture 1

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3383.odg')
knitr::include_graphics(path = "odg/ohp-page3383.png")
# fs::file_delete(path = '~/Desktop/IMG_3383.jpg')

OHP Picture 2

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3384.odg')
knitr::include_graphics(path = "odg/ohp-page3384.png")
# fs::file_delete(path = '~/Desktop/IMG_3384.jpg')

OHP Picture 3

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3385.odg')
knitr::include_graphics(path = "odg/ohp-page3385.png")
# fs::file_delete(path = '~/Desktop/IMG_3385.jpg')

OHP Picture 4

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3386.odg')
knitr::include_graphics(path = "odg/ohp-page3386.png")
# fs::file_delete(path = '~/Desktop/IMG_3386.jpg')

OHP Picture 5

##rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3387.odg')
knitr::include_graphics(path = "odg/ohp-page3387.png")
# fs::file_delete(path = '~/Desktop/IMG_3387.jpg')

OHP Picture 6

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3388.odg')
knitr::include_graphics(path = "odg/ohp-page3388.png")
# fs::file_delete(path = '~/Desktop/IMG_3388.jpg')

OHP Picture 7

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3389.odg')
knitr::include_graphics(path = "odg/ohp-page3389.png")
# fs::file_delete(path = '~/Desktop/IMG_3389.jpg')

OHP Picture 8

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3390.odg')
knitr::include_graphics(path = "odg/ohp-page3390.png")
# fs::file_delete(path = '~/Desktop/IMG_3390.jpg')

OHP Picture 9

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3391.odg')
knitr::include_graphics(path = "odg/ohp-page3391.png")
# fs::file_delete(path = '~/Desktop/IMG_3391.jpg')

OHP Picture 10

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3392.odg')
knitr::include_graphics(path = "odg/ohp-page3392.png")
# fs::file_delete(path = '~/Desktop/IMG_3392.jpg')

OHP Picture 11

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3393.odg')
knitr::include_graphics(path = "odg/ohp-page3393.png")
# fs::file_delete(path = '~/Desktop/IMG_3393.jpg')

OHP Picture 12

#rmdhelp::use_odg_graphic(ps_path = 'odg/ohp-page3394.odg')
knitr::include_graphics(path = "odg/ohp-page3394.png")
# fs::file_delete(path = '~/Desktop/IMG_3394.jpg')

charlotte-ngs/lbgfs2021 documentation built on Dec. 19, 2021, 3:01 p.m.