Files in chedonat/OncoPhase
SOMATIC MUTATION CELLULAR PREVALENCE COMPUTATION
DESCRIPTION
NAMESPACE
OncoPhase-manual.pdf
OncoPhase.Rproj
OncoPhase_0.1.tar.gz
R/.DS_Store
R/OncoPhase.R
R/OncoPhase_methods.R
README.md
Read-and-delete-me
data-raw/.DS_Store
data-raw/Data exemple to delete/CaseStudy_1.rda
data-raw/Data exemple to delete/CaseStudy_10.rda
data-raw/Data exemple to delete/CaseStudy_2.rda
data-raw/Data exemple to delete/CaseStudy_3.rda
data-raw/Data exemple to delete/CaseStudy_4.rda
data-raw/Data exemple to delete/CaseStudy_5.rda
data-raw/Data exemple to delete/CaseStudy_6.rda
data-raw/Data exemple to delete/CaseStudy_7.rda
data-raw/Data exemple to delete/CaseStudy_8.rda
data-raw/Data exemple to delete/CaseStudy_9.rda
data-raw/Data exemple to delete/CaseStudy_A.rda
data-raw/Data exemple to delete/CaseStudy_B.rda
data-raw/Data exemple to delete/CaseStudy_C.rda
data-raw/Data exemple to delete/chr10_OP1019.rda
data-raw/Data exemple to delete/chr10_XYZ101.rda
data-raw/Data exemple to delete/chr15_11152.rda
data-raw/Data exemple to delete/chr15_OP1019.rda
data-raw/Data exemple to delete/chr18_11152.rda
data-raw/Data exemple to delete/chr18_OP1019.rda
data-raw/Data exemple to delete/chr22_OP1019.rda
data-raw/Data exemple to delete/chr22_XYZ101.rda
data-raw/Data exemple to delete/simpleExample1.rda
data-raw/Data exemple to delete/simpleExample2.rda
data-raw/OncoPhase_methods_old.R
data-raw/build_casestudy.R
data-raw/build_casestudy_methods.R
data-raw/build_simpleExamples.R
data-raw/build_sox2Examples.R
data-raw/example.R
data-raw/example_sox2.R
data-raw/getFlankingSNPPrevalence.R
data-raw/getLocusGermlineMutations.R
data-raw/getPhasedSNPPrevalence.R
data-raw/getPrevalence.R
data-raw/getPrevalenceMatrice.R
data-raw/getPrevalenceMultiSample.R
data-raw/mainexamples.R
data-raw/new_method_allcase.R
data-raw/openrun.R
data-raw/simulation.R
data-raw/simulation_allcases.R
data-raw/simulation_allcases_new.R
data-raw/simulation_pyclone-odd.R
data-raw/simulation_pyclone.R
data-raw/simulation_pyclone_new.R
data-raw/solveR.R
data/.DS_Store
inst/.DS_Store
inst/extdata/phylogeny1_d300_n80.tsv
man/a-OncoPhase.Rd
man/getMatricesPhasedSNP.Rd
man/getMatricesSNVOnly.Rd
man/getPrevalence.Rd
man/getSamplePrevalence.Rd
man/getSinglePhasedSNPPrevalence.Rd
man/getSingleSNVOnlyPrevalence.Rd
vignettes/my-vignette.Rmd
