bam_mod: bam_mod
In cheejus2/Intron_Vis: visualization of introns in RNA-seq data
Description
Usage
Arguments
Value
Description
modifies the Gene model output from a BAM file so that the intron intronic regions can be visualized on the plot
Usage
1
bam_mod(wh, chr, bai, bam, introns)
Arguments
wh
The genes of interest for this model
chr
The single chromosome whose coverage you want to measure
bai
The BAM index file that quantifies that coverage
bam
The BAM file that quantifies that coverage
introns
Data Frame of the regions of the genome that are intronic
Value
object that specifies what the the genes of interest are
cheejus2/Intron_Vis documentation built on Dec. 8, 2019, 10:35 a.m.
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Description Usage Arguments Value
Description
modifies the Gene model output from a BAM file so that the intron intronic regions can be visualized on the plot
Usage
1 | bam_mod(wh, chr, bai, bam, introns)
|
Arguments
wh |
The genes of interest for this model |
chr |
The single chromosome whose coverage you want to measure |
bai |
The BAM index file that quantifies that coverage |
bam |
The BAM file that quantifies that coverage |
introns |
Data Frame of the regions of the genome that are intronic |
Value
object that specifies what the the genes of interest are
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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