chenlabgccri/Prep4DeepDEP: Prep4DeepDEP: an R Package to Prepare Data for DeepDEP

Prep4DeepDEP is an R package to prepare the input and output data files required by the Python package of DeepDEP (https://codeocean.com/capsule/3348251/tree/). DeepDEP is a deep learning model that uses the baseline genomic profiles of cancer cell lines (CCLs) or tumors to predict their gene dependencies (i.e., the degree to which knocking out a gene inhibits the survival of cancer cells). Please refer to the paper and DeepDEP package about how to use the generated data tables for DeepDEP model training and prediction.

Getting started

Package details

AuthorLi-Ju Wang, Yu-Chiao Chiu, Yidong Chen
MaintainerYidong Chen <ChenY8@uthscsa.edu>
LicenseGNU General Public License v3.0
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("chenlabgccri/Prep4DeepDEP")
chenlabgccri/Prep4DeepDEP documentation built on Aug. 8, 2020, 12:05 a.m.