Prep4DeepDEP is an R package to prepare the input and output data files required by the Python package of DeepDEP (https://codeocean.com/capsule/3348251/tree/). DeepDEP is a deep learning model that uses the baseline genomic profiles of cancer cell lines (CCLs) or tumors to predict their gene dependencies (i.e., the degree to which knocking out a gene inhibits the survival of cancer cells). Please refer to the paper and DeepDEP package about how to use the generated data tables for DeepDEP model training and prediction.
|Author||Li-Ju Wang, Yu-Chiao Chiu, Yidong Chen|
|Maintainer||Yidong Chen <ChenY8@uthscsa.edu>|
|License||GNU General Public License v3.0|
|Package repository||View on GitHub|
Install the latest version of this package by entering the following in R:
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