Prep4DeepDEP is an R package to prepare the input and output data files required by the Python package of DeepDEP (https://codeocean.com/capsule/3348251/tree/). DeepDEP is a deep learning model that uses the baseline genomic profiles of cancer cell lines (CCLs) or tumors to predict their gene dependencies (i.e., the degree to which knocking out a gene inhibits the survival of cancer cells). Please refer to the paper and DeepDEP package about how to use the generated data tables for DeepDEP model training and prediction.
|Li-Ju Wang, Yu-Chiao Chiu, Yidong Chen
|Yidong Chen <ChenY8@uthscsa.edu>
|GNU General Public License v3.0
|View on GitHub
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