ShowsgRNAvocano: ShowsgRNAvocano

In chenweng1991/CrisprScreen:

Description

This function plot vocano for sgRNA and label the top sgRNAs

Usage

ShowsgRNAvocano(enrichment.data, pCut = 1e-05, fcCut = 2,
  pvalueadjusted = T, dopdf = T, pdfname = "sgRNA.vocano.pdf",
  png = F, pngname = "sgRNA.vocano.png", pdfh = 7, pdfw = 7,
  pngh = 1000, pngw = 1000, pngr = 100)

Arguments

enrichment.data	The data prepared by "ComputeEnrichment"
pCut	p value/fdr cutoff for labeling sgRNAs
fcCut	Foldchange cutoff for labeling sgRNAs
pvalueadjusted	To tell if the y axis used is the adjusted pvalue or original p value, default is TRUE
dopdf	if true, print out pdf
pdfname	the file name for pdf of vocano plot
png,	if true then also make a png format. default is F
pngname	the file name for png of vocano plot
pdfh	the height of pdf
pdfw	the width of pdf
pngh	the height of png
pngw	the width of png
pngr	the resolution of png

Value

no return but generate a pdf or png

Examples

ShowsgRNAvocano(enrichment.data=P5.P6.enrichment,pCut=1e-5,fcCut=2,pdfname="sgRNA.vocano.pdf",png=T,pngname="sgRNA.vocano.png")

chenweng1991/CrisprScreen documentation built on July 12, 2019, 11:42 a.m.