MakeEvenBinBydepth_SpeedUP: MakeEvenBinBydepth
In chenweng1991/RePACT: What the Package Does (One Line, Title Case)
MakeEvenBinBydepth_SpeedUP R Documentation
MakeEvenBinBydepth
Description
This function is to make even bins for cells, to keep the cell number and total cell fragments even.
Usage
MakeEvenBinBydepth_SpeedUP(OBJ, data.info = BetaPeak.data.info, binnumber = 20)
Arguments
OBJ,
Seurat OBJ
Value
The function return a list: # data.info.withbin:(data.info + evenfragbin), cellvsPeak.m.aggr: gene ~ traj1-traj20 , index: mean pseudoindex of every traj_bin, depth: total frags of cells within each traj_bin
Examples
beta.RNA.PCA.20bin.ob <- MakeEvenBinBydepth_SpeedUP(OBJ=OBJ, data.info=BetaPCA[,51:ncol(BetaPCA)], binnumber=20)
chenweng1991/RePACT documentation built on Aug. 28, 2023, 6:28 p.m.
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| MakeEvenBinBydepth_SpeedUP | R Documentation |
MakeEvenBinBydepth
Description
This function is to make even bins for cells, to keep the cell number and total cell fragments even.
Usage
MakeEvenBinBydepth_SpeedUP(OBJ, data.info = BetaPeak.data.info, binnumber = 20)
Arguments
OBJ, |
Seurat OBJ |
Value
The function return a list: # data.info.withbin:(data.info + evenfragbin), cellvsPeak.m.aggr: gene ~ traj1-traj20 , index: mean pseudoindex of every traj_bin, depth: total frags of cells within each traj_bin
Examples
beta.RNA.PCA.20bin.ob <- MakeEvenBinBydepth_SpeedUP(OBJ=OBJ, data.info=BetaPCA[,51:ncol(BetaPCA)], binnumber=20)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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