cherkaos/MetabToPathways: Query metabolites to find their pathways, for multiple databases (Kegg, SMPDB, HMDB and Biocyc)
Version 1.0

Use name or other id (pubchem, kegg…) to find in which pathways a metabolite is from. Query different databases such as: Kegg, SMPDB, HMDB and Biocyc. Also include functions for batch query to find every pathway from different database, for each metabolite of a list. Can query specific databases (kegg) to find the pathway who has the most metabolite from query. Also, can output result in latex and csv.

Getting started

Package details

AuthorSarah Cherkaoui
MaintainerSarah Cherkaoui <[email protected]>
LicenseUCDavis
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("cherkaos/MetabToPathways")
cherkaos/MetabToPathways documentation built on May 12, 2017, 3:17 a.m.