cell.gene: cell-gene key table
In chichaumiau/DSA: Digital sorting of complex tissues for cell type specific gene expression profiles.
Description
Usage
Format
References
Description
This is the cell-gene key table: mapping between liver, brain, and lung to their respective tissue specific markers genes.
This was obtained from Tissue Specific Gene Expression Regulation (TIGER) database and GENENOTE
Usage
1
data('cell.gene')
Format
A data matrix of two columns and 237 rows of marker genes.
References
Liu X, Yu X, Zack DJ, Zhu H, Qian J: TiGER: a database for tissue-specific gene expression and regulation. BMC Bioinformatics 2008, 9:271
Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, Bar-Even A, Horn-Saban S, Safran M, Domany E, Lancet D, Shmueli O: Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 2005, 21:650–659.
chichaumiau/DSA documentation built on Dec. 19, 2021, 3:56 p.m.
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Description Usage Format References
Description
This is the cell-gene key table: mapping between liver, brain, and lung to their respective tissue specific markers genes. This was obtained from Tissue Specific Gene Expression Regulation (TIGER) database and GENENOTE
Usage
1 | data('cell.gene')
|
Format
A data matrix of two columns and 237 rows of marker genes.
References
Liu X, Yu X, Zack DJ, Zhu H, Qian J: TiGER: a database for tissue-specific gene expression and regulation. BMC Bioinformatics 2008, 9:271
Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, Bar-Even A, Horn-Saban S, Safran M, Domany E, Lancet D, Shmueli O: Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 2005, 21:650–659.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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