Description Usage Arguments Value
Computes the GMPR size factor
1 |
comm |
a matrix of counts, row - features (OTUs, genes, etc) , column - sample |
intersect.no |
the minimum number of shared features between sample pair, where the ratio is calculated |
ct.min |
the minimum number of counts required to calculate ratios ct.min = 5 has better results |
verbose |
suppress output |
A list that contains:
gmpr |
the GMPR size factors for all samples; Samples with distinct sets of features will be output as NA. |
nss |
number of samples with significant sharing (> intersect.no) including itself |
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