amu_with_diseases: AMU and Diseases data

In choisy/viparc: Utilitary functions for the ViParc project

Description

Data collected in the ViParc project (http://viparc.org).

Usage

amu_with_diseases

Format

A data frame with 3663 rows and 18 variables:

WeekID

ID of week, combining ID of flock with ID of week.

AMU

usage of antimicrobials, logical.

FarmID

ID of farm.

FlockID

ID of flock, combining ID of farm with ID of cycle.

Cycle

ID of cycle.

WEEK

Week number.

RESPIRATORY

Presence / absence of respiratory symptoms.

DIARRHOEA

Presence / absence of diarrhoea symptoms.

CNS

Presence / absence of central nervous system infection symptoms.

MALAISE

Presence / absence of malaise.

LEGLESIONS

Presence / absence of leg lesions.

SUDDENDEATH

Presence / absence of sudden death.

NoSign

Presence / absence of symptoms.

Sick_yes

Presence / absence of symptoms (any symptom).

OTHDISEASE

Presence / absence of other disease.

CHICKENSICKNO

Number of sick chicken.

CHICKENDISEASEDEATH

Number of chicken dead, excluding sudden death.

CHICKENSUDDENDEATH

Number of chicken dying from sudden death.

Details

Generated from amu_with_diseases <- merge(AMU, diseases, by = c("WeekID"), all.X = TRUE)

Source

http://viparc.org

choisy/viparc documentation built on May 30, 2019, 11:38 p.m.