clusterdef-class: clusterdef class

In chr1swallace/caller: caller

Description

Defines parameters used to describe location and spread of clusters.

Details

The definition is split into two parts. This separation allows us to define n clusters which depend on 4xm parameters (m is less than n), so that clusters with equal total copy number can share the same mean R, for example.

Cluster specific slots

a1:

Count of allele 1

a2:

Count of allele 2

R.index:

index of the R parameters that define the location of this cluster

theta.index:

index of the theta parameters that define the location of this cluster

Parameter slots

R.mean:

numeric vector, element i defines the mean of the gaussian distribution from which R values for clusters with R.index==i are selected

R.sd:

numeric vector, element i defines the sd of the gaussian distribution from which R values for clusters with R.index==i are selected

theta.a:

numeric vector, element i defines the shape 1 parameter of the beta distribution from which theta values for clusters with theta.index==i are selected

theta.b:

numeric vector, element i defines the shape2 parameter of the beta distribution from which theta values for clusters with theta.index==i are selected

chr1swallace/caller documentation built on May 13, 2019, 6:18 p.m.