Files in chrisroederucdenver/ETL-Synthea
A Builder for Converting the Synthea Data to the OMOP CDM
.Rbuildignore
.gitignore
DESCRIPTION
Design/RabbitInAHatDesign.json.gz
Design/ScanReport.xlsx
Design/SyntheaDesign_v6.json.gz
Design/SyntheaETLSpecification.docx
Design/SyntheaETLSpecification_v6.docx
Design/SyntheaETLSpecification_v6.md
ETL/SQL/AAVITable.sql
ETL/SQL/AllVisitTable.sql
ETL/SQL/cdm_v5.3_constraints_ddl.sql
ETL/SQL/cdm_v5.3_ddl.sql
ETL/SQL/cdm_v5.3_indexes_ddl.sql
ETL/SQL/create_source_to_source_vocab_map.sql
ETL/SQL/create_source_to_standard_vocab_map.sql
ETL/SQL/drop_cdm_tables.sql
ETL/SQL/final_visit_ids.sql
ETL/SQL/insert_condition_era.sql
ETL/SQL/insert_condition_occurrence.sql
ETL/SQL/insert_death.sql
ETL/SQL/insert_drug_era.sql
ETL/SQL/insert_drug_exposure.sql
ETL/SQL/insert_location.sql
ETL/SQL/insert_measurement.sql
ETL/SQL/insert_observation.sql
ETL/SQL/insert_observation_period.sql
ETL/SQL/insert_person.sql
ETL/SQL/insert_procedure_occurrence.sql
ETL/SQL/insert_visit_occurrence.sql
ETL/SQL/synthea_ddl.sql
ETLSyntheaBuilder.Rproj
LICENSE
NAMESPACE
R/CreateEventTables.r
R/CreateSyntheaTables.r
R/CreateVisitRollupTables.r
R/CreateVocabMapTables.r
R/CreateVocabTables.r
R/DropEventTables.r
R/DropMapAndRollupTables.R
R/DropSyntheaTables.r
R/DropVocabTables.r
R/LoadEventTables.r
R/LoadSyntheaTables.r
R/LoadVocabFromCsv.r
R/LoadVocabFromSchema.r
R/TruncateEventTables.r
R/TruncateVocabTables.r
R/backupCDM.r
R/createPrunedTables.r
R/exportToSQLite.r
R/getEventConceptId.r
R/pruneCDM.r
R/restoreCDMTables.r
WindowsLoader.r
assets/js/search-data.json
bulk-load
docs/Condition_occurrence.md
docs/Drug_exposure.md
docs/Measurement.md
docs/Observation.md
docs/Observation_period.md
docs/Person.md
docs/Procedure_occurrence.md
docs/Visit_occurrence.md
docs/_config.yml
docs/index.md
docs/syntheaETL_files/image1.png
docs/syntheaETL_files/image10.png
docs/syntheaETL_files/image11.png
docs/syntheaETL_files/image12.png
docs/syntheaETL_files/image13.png
docs/syntheaETL_files/image2.png
docs/syntheaETL_files/image3.png
docs/syntheaETL_files/image4.png
docs/syntheaETL_files/image5.png
docs/syntheaETL_files/image6.png
docs/syntheaETL_files/image7.png
docs/syntheaETL_files/image8.png
docs/syntheaETL_files/image9.png
extras/ConditionTests.r
extras/ObservationPeriodTests.r
extras/PersonTests.r
extras/RunSyntheaTestCases.r
extras/SampleCompleteProcess.R
extras/SupportFunctions.r
extras/SyntheaTestFramework.r
extras/VisitTests.r
extras/codeToRun.R
extras/insert.sql
extras/test.sql
inst/settings/config.csv
inst/sql/sql_server/AAVITable.sql
inst/sql/sql_server/AllVisitTable.sql
inst/sql/sql_server/backup_cdm.sql
inst/sql/sql_server/create_event_tables.sql
inst/sql/sql_server/create_source_to_source_vocab_map.sql
inst/sql/sql_server/create_source_to_standard_vocab_map.sql
inst/sql/sql_server/create_synthea_tables.sql
inst/sql/sql_server/create_vocab_tables.sql
inst/sql/sql_server/drop_event_tables.sql
inst/sql/sql_server/drop_map_and_rollup_tables.sql
inst/sql/sql_server/drop_synthea_tables.sql
inst/sql/sql_server/drop_vocab_tables.sql
inst/sql/sql_server/final_visit_ids.sql
inst/sql/sql_server/get_event_concept_id.sql
inst/sql/sql_server/insert_cdm_source.sql
inst/sql/sql_server/insert_condition_era.sql
inst/sql/sql_server/insert_condition_occurrence.sql
inst/sql/sql_server/insert_drug_era.sql
inst/sql/sql_server/insert_drug_exposure.sql
inst/sql/sql_server/insert_measurement.sql
inst/sql/sql_server/insert_observation.sql
inst/sql/sql_server/insert_observation_period.sql
inst/sql/sql_server/insert_person.sql
inst/sql/sql_server/insert_procedure_occurrence.sql
inst/sql/sql_server/insert_visit_occurrence.sql
inst/sql/sql_server/restore_cdm_tables.sql
inst/sql/sql_server/truncate_event_tables.sql
inst/sql/sql_server/truncate_vocab_tables.sql
inst/sqlite/cdm.sqlite.gz
man/CreateEventTables.Rd
man/CreateSyntheaTables.Rd
man/CreateVisitRollupTables.Rd
man/CreateVocabMapTables.Rd
man/CreateVocabTables.Rd
man/DropEventTables.Rd
man/DropMapAndRollupTables.Rd
man/DropSyntheaTables.Rd
man/DropVocabTables.Rd
man/LoadEventTables.Rd
man/LoadSyntheaTables.Rd
man/LoadVocabFromCsv.Rd
man/LoadVocabFromSchema.Rd
man/TruncateEventTables.Rd
man/TruncateVocabTables.Rd
man/backupCDM.Rd
man/createPrunedTables.Rd
man/exportToSQLite.Rd
man/getEventConceptId.Rd
man/pruneCDM.Rd
man/restoreCDMTables.Rd
readme.md
