createPrunedTables: Create pruned CDM and Vocab tables.

In chrisroederucdenver/ETL-Synthea: A Builder for Converting the Synthea Data to the OMOP CDM

Description

This function creates the pruned cdm and vocab tables by keeping only those rows from the original tables for given concept_ids.

Usage

createPrunedTables(connectionDetails,cdmDatabaseSchema,vocabDatabaseSchema,eventConceptId)

Arguments

connectionDetails	An R object of type connectionDetails created using the function createConnectionDetails in the DatabaseConnector package.
cdmDatabaseSchema	The name of the database schema that contains the CDM instance. Requires read and write permissions to this database. On SQL Server, this should specifiy both the database and the schema, so for example 'cdm_instance.dbo'.
vocabDatabaseSchema	The name of the database schema that contains the Vocabulary instance. Requires read and write permissions to this database. On SQL Server, this should specifiy both the database and the schema, so for example 'vocab_instance.dbo'.
eventConceptId	A vector of concept_ids returned from getEventConceptId.

chrisroederucdenver/ETL-Synthea documentation built on Aug. 1, 2020, 4:21 p.m.