make.Gmatrix: G-matrix
In chrissy3815/exactLTRE: An Exact Method for Life Table Response Experiment (LTRE) Analysis
make.Gmatrix R Documentation
G-matrix
Description
The G-matrix is the operator used for calculating a vector of effects from a
vector of responses, up to arbitrary interaction order. This recursive function
for building up the G-matrix is presented in a paper about genetic epistasis
from Poelwijk, Krishna, and Ranganathan (2016, PLOS Comp Bio
\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pcbi.1004771")}). When the G-matrix is
multiplied on the right by a column vector of the observed responses, it will
produce a column vector of the effects. In other words, the G-matrix adds and
subtracts off the appropriate lower-order terms to arrive at the correct values
of interaction effects.
Usage
make.Gmatrix(n)
Arguments
n
The number of observed parameters, mutation sites, etc.
Value
A matrix that is 2^n-by-2^n.
Examples
Gmat<- make.Gmatrix(3)
chrissy3815/exactLTRE documentation built on July 1, 2023, 8:30 a.m.
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| make.Gmatrix | R Documentation |
G-matrix
Description
The G-matrix is the operator used for calculating a vector of effects from a vector of responses, up to arbitrary interaction order. This recursive function for building up the G-matrix is presented in a paper about genetic epistasis from Poelwijk, Krishna, and Ranganathan (2016, PLOS Comp Bio \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pcbi.1004771")}). When the G-matrix is multiplied on the right by a column vector of the observed responses, it will produce a column vector of the effects. In other words, the G-matrix adds and subtracts off the appropriate lower-order terms to arrive at the correct values of interaction effects.
Usage
make.Gmatrix(n)
Arguments
n |
The number of observed parameters, mutation sites, etc. |
Value
A matrix that is 2^n-by-2^n.
Examples
Gmat<- make.Gmatrix(3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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