sycomore: A comprehensive function for sycomore
In chupan1218/sycomore: R implementation of sycomore
Description
Usage
Arguments
Value
Examples
View source: R/main.function.R
Description
The sycomore function is to quantify the synergistic and competitive relationship between miRNAs.
Usage
1
sycomore(miRtarget, miRNAexpression, mRNAexpression)
Arguments
miRtarget
miRNA target binding matrix
miRNAexpression
miRNA expression matrix
mRNAexpression
mRNA expression matrix
Value
sycomore returns a result in the form of a data frame
Examples
1
2
3
4
5
6
# load datasets
load(system.file("extdata/tcga.brca.testdata.Rdata", package="sycomore"))
miRNAexpression <- log2(miRNAexpression + 1)
mRNAexpression <- log2(mRNAexpression + 1)
# call function
sycomore(miRtarget, miRNAexpression, mRNAexpression)
chupan1218/sycomore documentation built on Dec. 19, 2021, 4:07 p.m.
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Description Usage Arguments Value Examples
View source: R/main.function.R
Description
The sycomore function is to quantify the synergistic and competitive relationship between miRNAs.
Usage
1 | sycomore(miRtarget, miRNAexpression, mRNAexpression)
|
Arguments
miRtarget |
miRNA target binding matrix |
miRNAexpression |
miRNA expression matrix |
mRNAexpression |
mRNA expression matrix |
Value
sycomore returns a result in the form of a data frame
Examples
1 2 3 4 5 6 | # load datasets
load(system.file("extdata/tcga.brca.testdata.Rdata", package="sycomore"))
miRNAexpression <- log2(miRNAexpression + 1)
mRNAexpression <- log2(mRNAexpression + 1)
# call function
sycomore(miRtarget, miRNAexpression, mRNAexpression)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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