Man pages for churchill-lab/qtl2tricks
Tricks for Karl Broman's qtl2.
| add_blup_to_lod_peaks | Given a table of LOD peaks and the data used to generate... |
| determine_ensembl_version | Given a list of Ensembl gene IDs, determine which Ensembl... |
| get_chr_length | Estimate the chromosome lengths from the location of the gene... |
| get_ensembl_genes | Get ensembl GTF as a GRanges object. |
| ggtmap | Make a transcriptome map using the ggplot2 framework. |
| herit_ci_plot | Plot the heritability estimates and their confidene... |
| herit_per_chr | Estimate the heritability of a phenotype on each chromosome. |
| herit_per_chr_ci | Estimate the confidence interval of a heritability estimate. |
| plot_genome_features | Given a set of genomic features (genes, SNPs, etc.), plot... |
