pss.rc: PSS for rows and columns

In cjpardodelahoz/pss: Phylogenetic Structure of Specialization Index (One Line, Title Case)

PSS for rows and columns

Description

PSS for the rows and columns of an interaction matrix. PSS is a standardized effect size (SES) of klMPD.

Usage

pss.rc(samp, phyl.rows, phyl.cols, q.rows, q.cols)

Arguments

samp	Required. A matrix. Elements of the matrix are interaction frequencies.
phyl.rows	Required. An object of class phylo. This is a phylogenetic tree that includes all the taxa in the rows of samp. This tree may have taxa not included in samp.
phyl.cols	Required. An object of class phylo. This is a phylogenetic tree that includes all the taxa in the columns of samp. This tree may have taxa not included in samp.
q.rows	Optional. A named numerical vector with the relative availabilities (i.e., sum(q) = 1) of the taxa in the rows of samp. Default is to estimate these values from interaction frequencies.
q.cols	Optional. A named numerical vector with the relative availabilities (i.e., sum(q) = 1) of the taxa in the columns of samp. Default is to estimate these values from interaction frequencies.

Value

A list with two dataframes (rows and columns) with results for each species in samp.

Author(s)

Carlos J. Pardo De la Hoz

cjpardodelahoz/pss documentation built on Nov. 21, 2022, 11:10 p.m.