combineProfiles: Combine Profiles
In clarepacini/DrugVsDisease: Comparison of disease and drug profiles using Gene set Enrichment Analysis
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
Combine a set of hybridisations using the median rank method as proposed by Warnat
Usage
1
Arguments
data
A list of R objects, each object should contain a matrix of expression values to be merged with each other. The first object will be used as the reference data set.
Details
The combine profiles function merges a set of expression values, normalising across different experiments to facilitate the meta-analysis of similar experiments i.e. cell lines treated with the same drug but which may be from different "batches" or platforms.
Value
Matrix of rank normalised expression data. Rows are genes, columns are hybridisations from the different experiments.
Author(s)
C. Pacini
References
R code from CONOR package.
Need also reference to the method.
clarepacini/DrugVsDisease documentation built on May 24, 2019, 7:21 p.m.
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Description Usage Arguments Details Value Author(s) References
Description
Combine a set of hybridisations using the median rank method as proposed by Warnat
Usage
1 |
Arguments
data |
A list of R objects, each object should contain a matrix of expression values to be merged with each other. The first object will be used as the reference data set. |
Details
The combine profiles function merges a set of expression values, normalising across different experiments to facilitate the meta-analysis of similar experiments i.e. cell lines treated with the same drug but which may be from different "batches" or platforms.
Value
Matrix of rank normalised expression data. Rows are genes, columns are hybridisations from the different experiments.
Author(s)
C. Pacini
References
R code from CONOR package. Need also reference to the method.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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