gtf2tximport: Function to convert GTF to tximport.geneid2symbol and...
In clindet/clinaml: Clinical diagnosis tool for AML

gtf2tximport

R Documentation

Function to convert GTF to tximport.geneid2symbol and tximport.genes

Function to convert GTF to tximport.geneid2symbol and tximport.genes

gtf2tximport(
  gtf = NULL,
  outprefix = "tximport",
  use_remote_genecode = FALSE,
  version = 38
)

gtf

GTF path (e.g. GENECODE v34)

 {
  gtf2tximport("gencode.v38.annotation.gtf")
  gtf2tximport("tximport.genes", use_remote_genecode = TRUE)

clindet/clinaml documentation built on Jan. 3, 2023, 6:13 a.m.

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