uniqueTissues: get tissue information

In cma2015/rsgcc: Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data

get tissue information

Description

This function reads the sample names of genes and get unique tissue information for further tissue-specific genes finding and clustering.

Usage

uniqueTissues(x)

Arguments

x	a numeric matrix containing gene expression value. The column labels are samples names. For two samples from the same tissue T, their names should be assigned as T.1 and T.2, respectively.

Value

A data matrix in which the elements is 0 (the sample not from the tissue) or 1 (the sample from the tissue)

Author(s)

Chuang Ma, Xiangfeng Wang

See Also

getsgene, gcc.tsheatmap.

Examples

## Not run: 
   data(rsgcc)
   x <- rnaseq
   uniqueTissues(x)

## End(Not run)

cma2015/rsgcc documentation built on June 10, 2022, 11:29 a.m.