Man pages for cmhoove14/SchistoDynAgg
dynamic aggregation and helminthic disease elimination
| abc_fit | ABC fitting |
| alpha_likelihood | Custom max likelihood function for dispersion parameter |
| est_case3_meanW | Case 3 mean from parameters |
| est_case3_varW | Case 3 variance from parameters |
| est_dispW | Moments estimator of dispersion parameter |
| exp_seq | Log-distributed sequence |
| gen_case12_pars | Generate priors for case 1/2 dataset generation |
| gen_case1_data | Generate synthetic case 1 dataset |
| gen_case2_data | Generate synthetic case 2 dataset |
| gen_case3_data | Generate synthetic case 3 dataset |
| gen_case3_pars | Generate priors for case 3 dataset generation |
| gen_case4_data | Generate synthetic case 4 dataset |
| gen_case4_pars | Generate priors for case 4 dataset generation |
| get_abc_med_iqr | Median and IQR of abc posterior |
| get_boot_df | Get data frame of observations for desired ZEST strata |
| get_boot_ests | Get bootstrapped GEE estimates |
| mean_var_agg_crctd | Get aggregation parameter from observed data |
| mean_var_agg_par | Estimate aggregation parameter from mean-variance... |
| mle_alpha | Finds max likelihood of the inverse of the dispersion... |
| mle_alpha_se | Finds max likelihood of the dispersion parameter using... |
| mle_disp_par | Estimate MLE dispersion parameter using... |
| mle_disp_par_sd | Estimate MLE standard error of dispersion parameter using... |
| mle_kap | Finds max likelihood of the dispersion parameter using... |
| mle_kap_se | Finds max likelihood of the dispersion parameter using... |
| mle_mean_par | Estimate MLE mean parameter using 'fitdistrplus::fitdist' |
| mle_mean_par_sd | Estimate MLE standard error of mean parameter using... |
| phi_Wk | Schistosomiasis Case 1 mating probability |
| phi_wk_sep | Function to estimate mating probability for sexes distributed... |
| post_pred_data_gen | ABC Posterior Predictive Check data generation |
| prev_W_get_k | Estimate aggregation parameter, kappa, as function of mean... |
| prob_j_pairs | Function to estimate the probability of an individual host... |
| quiet | Quietly run |
