Files in cmhoove14/SchistoDynAgg
dynamic aggregation and helminthic disease elimination
.Rbuildignore
.gitignore
.here
Admin/DynamicAggregationManuscript_out.docx
Admin/DynamicAggregationMethods_Results.Rmd
Admin/PlosNTDs_ReviewerComments.docx
Admin/Schisto_DynAgg_CoverLetter.docx
Admin/~$osNTDs_ReviewerComments.docx
Analysis/0-Data-Process.R
Analysis/11-Agg-Burden_GEE.R
Analysis/12-kappa_change_bootstrap.R
Analysis/21-ABC-Worm-Burden-Estimation.R
Analysis/22-ABC-Posteriors.R
Analysis/23-ABC-Mod-Comps.R
Analysis/24-ABC-PostPred-Checks.R
Analysis/Figures/Fig1-AggGEE-Results.R
Analysis/Figures/Fig2-ABC-Worm-Burden-Agg-Posterior.R
Analysis/Figures/Fig3a-ABC-PostPred-Obs-Comps.R
Analysis/Figures/Fig3b-ABC-Mod-Comp-BayesF.R
Analysis/Figures/Fig4-Mate-Prob-Comp.R
Analysis/Figures/Fig5_Case1-3_kap_diff.R
Analysis/Figures/Supplementary/2F2-ABC-Mod-Comp-BayesF.R
Analysis/Figures/Supplementary/2FS2-ABC-Case3-Comparison.R
Analysis/Figures/Supplementary/2FS3-ABC-EstW-to-obsE-Comp.R
Analysis/Figures/Supplementary/2FS4-ABC-Case3-4-Special-Pars.R
Analysis/MS_Results.Rmd
Analysis/MS_Results.docx
Analysis/Run_ABC_Analysis.sh
Analysis/Run_ABC_PostPred.sh
Analysis/Run_All.sh
Analysis/Run_GEE_Bootstrap.sh
DESCRIPTION
Figures/ABC_Case4_Partition_Parameter_by_W.png
Figures/Fig1_GEE_Results.pdf
Figures/Fig1_GEE_Results.png
Figures/Fig2_ABC_Kap_by_W_Results.pdf
Figures/Fig2_ABC_Kap_by_W_Results.png
Figures/Fig3a_ABC_PostPred_Obs_Comp.pdf
Figures/Fig3a_ABC_PostPred_Obs_Comp.png
Figures/Fig4_Mate_Probs.pdf
Figures/Fig4_Mate_Probs.png
Figures/Fig5_Kap_Diff_Case1_3.pdf
Figures/Fig5_Kap_Diff_Case1_3.png
Figures/SuppFig-ABC_Bayes_Factor_Comp1.png
LICENSE
NAMESPACE
R/abc_worm_estimation_functions.R
R/dispersion_parameter_functions.R
R/gee_bootstrapping_functions.R
R/mating_probability_functions.R
README.md
SchistoDynAgg.Rproj
man/abc_fit.Rd
man/alpha_likelihood.Rd
man/est_case3_meanW.Rd
man/est_case3_varW.Rd
man/est_dispW.Rd
man/exp_seq.Rd
man/gen_case12_pars.Rd
man/gen_case1_data.Rd
man/gen_case2_data.Rd
man/gen_case3_data.Rd
man/gen_case3_pars.Rd
man/gen_case4_data.Rd
man/gen_case4_pars.Rd
man/get_abc_med_iqr.Rd
man/get_boot_df.Rd
man/get_boot_ests.Rd
man/mean_var_agg_crctd.Rd
man/mean_var_agg_par.Rd
man/mle_alpha.Rd
man/mle_alpha_se.Rd
man/mle_disp_par.Rd
man/mle_disp_par_sd.Rd
man/mle_kap.Rd
man/mle_kap_se.Rd
man/mle_mean_par.Rd
man/mle_mean_par_sd.Rd
man/phi_Wk.Rd
man/phi_wk_sep.Rd
man/post_pred_data_gen.Rd
man/prev_W_get_k.Rd
man/prob_j_pairs.Rd
man/quiet.Rd
