| compile.mmre | Compiling TMB C++ templates |
| coords2spdf | Function to make a SpatialPolygonsDataFrame from a matrix of... |
| dll.mmre | load DLLs for C++ templtes |
| fit.mmre | Function to fit two state Markov model with individual level... |
| get.AIC | Function to calculate AIC of mmre fitted model |
| get.coefs | Coefficient method for mmre model |
| get.mmre.data | Function to combine argumets and data into a 'mmre' object... |
| get.params | Function to extract either the fixed or random parameters... |
| get.probs | Function to get the transition propabilities from a fitted... |
| hist.time | Function to plot a histogram of dates |
| ll | Function to extract the log likelihood from the fitted models |
| lr.test | Function to do a likelihood ratio test between two models,... |
| map | Function to location data Method to map a... |
| mmre | Funtions requred to fit two state Markov model with or... |
| mmre.mod | Function that choses C++ template to use for model |
| mmre.summary | Funtion to get summary information from a 'mmre' object |
| onrange | Function to find if estimated locations are on or off range |
| q2p | Function to turn off diagonal 2 state transition matrix... |
| seqMat | calculates a sequence matrix from consecutive TRUE/FALSE... |
| show.all | Function to plot all animal tracks in one dataset along with... |
| show.duration | Function to show duration of exposure data |
| show.probs | Function to plot the (off diagonal) transition probabilties... |
| show.random | Function to show the individual normal random effects of... |
| sim.mmre | Function to simulate a two state Markov transition baseline... |
| sim.mmre.decay | Function to simulate Matrkov transition model where... |
| sim.mmre.offdiag | Function to simulate a two state Markov transition log-linear... |
| sim.mmre.trunc | Function to simulate a two state Markov transition truncated... |
| sl2sp | Function to change a SpatialLinesDataFrame to a... |
| trans.matrix | Function to get transition matrix |
