mmre: Funtions requred to fit two state Markov model with or...

In cmjt/mmre: Two state Markov models with individual level random effects

Funtions requred to fit two state Markov model with or without individual effects

Description

Funtions requred to fit two state Markov model with or without individual effects

Details

Must compile required TMB templates to use The mmre class

Slots

data

a data frame which must contain the following named elements ID, state, time to be used with fit.mmre

summary

a summary of data, automatiacally created when calling fit.mmre, filled using mmre.summary. Includes raw transition probabilities.

fit_data

a list of the data required to use fit.mmre (automatically filled)

continuous

logical, should a continuous model be used (default)

fitted

a character of the chosen model based on arguments given to fit.mmre, chosen using mmre.mod

cov_names

a charater string or vector of covariate names (elements in data) (only for multiple individuals)

parameters

a named list of starting values for the model, assumed model is chosen based on the contents of this list (i.e., to fit a correlated random effect model parameters must contain the elements u, log_sig_u and cov_par)

fit

contains the model output

sdreport

summary information of the model

cmjt/mmre documentation built on Oct. 2, 2023, 11:24 p.m.